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Triolith
This system is maintaned by NSC.
Specification
Type | HP Proliant SL230s |
# of CPUs / node | 2 |
# of cores / CPU | 8 |
Memory / node | 32/128 GB |
Memory / core | 2/8 GB |
CPU | Intel Xeon E5-2660 @ 2.2 GHz |
Architecture | x86_64 / intel64 / em64t little-endian |
Scheduler | Slurm |
MPI | Open MPI (ompi) |
ESZR | none |
Shell Environment
Precompiled Environment
From Skynet sync up the precompiled environment:
cd /share/nsc/triolith sshput
The precompiled environment does not contain the program binaries and data libraries. To transfer a PROGRAM:
cd /share/nsc/triolith/pkg sshtx put triolith PROGRAM
Shell Framework
Login to triolith:
sshin triolith
On triolith:
cd $HOME git clone git://github.com/hornos/shf3.git
Source and setup the Shell Framework in $HOME/.bash_profile
:
source $HOME/shf3/bin/shfrc # set the prompt shf3/ps1 TRIOLITH[\\h] # set framework features shf3/alias yes shf3/screen yes shf3/mc/color yes
function status() { sjstat -c sinfo }
Parallel Compressor
Enable the parallel compressor for the framework:
cd echo "sys_zip_xg_gz=pigz" > shf3/lib/sys/zip/xg/config.$USER
Module Environment
Set modules in $HOME/.bash_profile
:
module use $HOME/local/modulefiles alias mla="module avail" alias mls="module list" alias mld="module load" module load impi/4.0.3.008 module load sys/triolith
Logout and login again.
Job Setup
Setup the Queue file and edit the parameters:
cd $HOME/shf3/mid/que cp templates/nsc/triolith . mcedit triolith
Job template is in $HOME/shf3/mid/que/templates/nsc/triolith.job